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Answer by Ashwini Chaudhary for Protein sequence pattern-matching python
I edited your code and it is giving correct output now:seq="----AB--C-D-----"newseq="--A--BC---D-"seq=list(seq) #changing maaster sequence from string to listnewseq=list(newseq) #changing new sequence...
View ArticleAnswer by rlinden for Protein sequence pattern-matching python
The problem of sequence alignment is well known and its solution is well described. For an introductory text, see the Wikipedia. The best solution I know involves Dynamic programming, and you can see...
View ArticleProtein sequence pattern-matching python
I'm working on a matching algorithm for protein sequences. I'm starting with an aligned protein sequence, and I am attempting to convert a mis-aligned sequence into the correctly aligned one. Here is...
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